dviraran SingleR issues

dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

GNU General Public License v3.0

275 stars 98 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

split test dataset and see differences in annotation

#164 yamihn opened 1 month ago
1
Assigning cell types problem

#163 esoaress closed 5 months ago
1
Error while downloading SingleR

#162 isaiao01 opened 6 months ago
1
Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. Traceback:

#161 ArzooShamoon opened 6 months ago
1
SingleR - "sc_data" is missing

#160 nitinmahajan20 opened 7 months ago
1
Positive correlation between the identity score of the right identities and the rest

#159 cesarsierran opened 8 months ago
0
SingleR error

#158 Jessa135 opened 9 months ago
1
Annotate Seurat object of several patients

#157 LeaLe88 opened 1 year ago
0
Can we use SingleR to annotate BulkRNAseq when reference is also bulk

#156 Rohit-Satyam closed 1 year ago
3
Microwell-Seq Mouse Cell Atlas link on README.md is not working

#155 vladimirkovacevic opened 1 year ago
0
Questions about confidence score

#154 Kevis9 opened 1 year ago
0
discriminant features

#153 antoine4ucsd opened 1 year ago
0
issue with input?

#152 eliabrodsky1 opened 2 years ago
0
SingleR Performance Issue

#151 rohitgarg2411 closed 2 years ago
0
SingleR() error

#150 Fathzadehm opened 2 years ago
2
Error in rowAnyNAs(DelayedArray(x))

#149 Lijunyao8 closed 3 years ago
1
create custom reference dataset

#148 andynkili closed 2 years ago
2
Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x && y'

#147 njtourtillott opened 3 years ago
4
Can't download MouseRNAseqData

#146 JiahuaQu opened 3 years ago
0
the Seurat3.2.2 load and SingleR 1.0.1 conflict error

#145 honghh2018 opened 3 years ago
1
'assay(<SingleCellExperiment>, i="character", ...)' invalid subscript 'i' 'dimnames' applied to non-array

#144 aanchalsharma833 opened 3 years ago
0
can i annotate cells in specific cell types?

#143 hansonglee opened 3 years ago
0
How to annotation cluster by singleR 1.2.4

#142 zenghh1226 closed 4 years ago
2
Retrieving a list of marker genes which were used assign cell type labels to clusters

#141 jdd1e16 opened 4 years ago
1
Cell labeling using SingleR in seurat

#140 ruchikabhat opened 4 years ago
1
Minor fixes on lines 33 & paragraph 35

#139 kant opened 4 years ago
0
Seurat object as input and normalization

#138 Diozao666 opened 4 years ago
1
plotDeltaDistribution not found

#137 ghost opened 4 years ago
1
how to create a new reference data set

#136 Shawn10312 opened 4 years ago
4
Adding annotations

#135 AteeqMKhaliq opened 4 years ago
2
can't find any of the functions related to reference data sets

#134 nawazahid opened 4 years ago
1
Download failed

#133 chansigit closed 4 years ago
1
Timeout error

#132 KBoostan opened 4 years ago
2
error in BlueprintEncodeData()

#131 rachelzhu123 opened 4 years ago
1
Function"CreateSinglerSeuratObject" was not found! Where's the way out?

#130 chuanyang-learner opened 4 years ago
1
Updated Bioconductor link

#129 dtm2451 closed 4 years ago
0
SingleR install issue

#128 hi9739 opened 4 years ago
2
About how to construct the trainning data set for building the annotation database of other species

#127 BioAIEvolu opened 4 years ago
1
undefined columns selected

#126 rahulnutron opened 4 years ago
1
SingleR installation error: ‘SingleR’ is not available (for R version 3.6.1)

#125 shintzen closed 4 years ago
1
SingleR web tool

#124 phoebee-h opened 4 years ago
2
Bug in Dataset function HumanPrimaryCellAtlasData()

#123 saisaitian opened 4 years ago
1
Error in use the function SingleR.Subset when reproduce the Figures in paper

#122 duosu closed 5 years ago
0
bug in CreateBigSingleRObject

#121 systemsgenomics opened 5 years ago
1
Applying of Seurat cell-clustering analysis in SingleR

#120 erikfel97 opened 5 years ago
3
The SingleR.PlotTsne error

#119 nanshanjin closed 5 years ago
0
can not download sqlite3 file

#118 BioLaoXu closed 5 years ago
1
fineTuningRound method

#117 xiebb123456 opened 5 years ago
1
Bioconda version of SingleR

#116 hramadas opened 5 years ago
1
Create SingleR object from an existing seurat object

#115 naamama opened 5 years ago
7