fiuneuro cis-processing issues

fiuneuro / cis-processing

Automated transfer, conversion, and processing of data acquired at the FIU Center for Imaging Science.

Apache License 2.0

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issues

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Use PySLURM in pull_dicoms_workflow

#67 tsalo opened 4 years ago
0
[ENH] Simplify workflow

#66 tsalo closed 4 years ago
2
[FIX, REF] Fix some stuff

#65 tsalo closed 4 years ago
1
Simplification proposal

#64 tsalo closed 4 years ago
1
Add datalad option

#63 tsalo closed 4 years ago
1
[REF, DOC] Change workflow names

#62 tsalo closed 4 years ago
0
Purpose of master scans file

#61 tsalo opened 4 years ago
0
[ENH] Allow builtin heuristics

#60 tsalo closed 4 years ago
0
Rename modules

#59 tsalo closed 4 years ago
2
[REF] Initial modularization

#58 tsalo closed 4 years ago
0
[MAINT] Added 'setup.cfg', cleaning up a few style issues

#57 akimbler closed 4 years ago
1
[STY] Heavy 'pep8' cleanup and minor code refactors

#56 akimbler closed 4 years ago
0
Create metarepo with documentation

#55 tsalo closed 4 years ago
5
Document other BIDSification tools

#54 tsalo opened 4 years ago
0
[DOC, REF] Simplify code and improve README

#53 tsalo closed 4 years ago
1
Replace example LSF job with SLURM job

#52 tsalo closed 4 years ago
0
Move protocol check and MRIQC scripts into "addons" subfolder

#51 tsalo opened 4 years ago
0
Update gitignore.

#50 tsalo closed 5 years ago
0
allow reproin string instead of heuristics file

#49 mriedel56 closed 4 years ago
1
V0.0.3

#48 mriedel56 closed 5 years ago
2
Update v0.0.2 from master

#47 tsalo closed 5 years ago
0
V0.0.3

#46 mriedel56 closed 5 years ago
0
Update CI config.

#45 tsalo closed 5 years ago
0
Update CircleCI config.

#44 tsalo closed 5 years ago
0
Add CircleCI config file for linting.

#43 tsalo closed 5 years ago
0
Fix bugs in cis.py.

#42 tsalo closed 5 years ago
0
[WIP, ENH] Draft pseudo-ReproIn heuristics file

#41 tsalo closed 5 years ago
1
incorporate myquota

#40 mriedel56 opened 5 years ago
1
Add tutorial notebooks

#39 tsalo opened 5 years ago
0
Version this repository

#38 tsalo closed 5 years ago
2
Streamline workflow

#37 tsalo opened 5 years ago
0
Generate and merge json file for participants file

#36 tsalo opened 5 years ago
2
Explicitly set newline character in participants file

#35 tsalo closed 4 years ago
0
Some quick PEPification changes

#34 akimbler closed 5 years ago
2
Updated CIS Processing Workflow

#33 mriedel56 closed 5 years ago
0
create data transfer script

#32 mriedel56 closed 5 years ago
1
include emails in config file

#31 mriedel56 closed 5 years ago
3
Port BIDS dataset merging to separate function/module

#30 tsalo closed 4 years ago
1
[ENH] Output derivatives to folder outside of BIDS dataset

#29 tsalo closed 5 years ago
2
[ENH] Moved Project Flag to config file

#28 akimbler closed 6 years ago
4
Possible Change to Config Files

#27 akimbler closed 6 years ago
2
Permissions Issues with Singularity Images

#26 akimbler closed 6 years ago
0
Make age extraction more flexible

#25 tsalo closed 6 years ago
3
[ENH] Reduced Clutter on Failed Validation

#24 akimbler closed 6 years ago
1
[ENH] Replace dicom_dir argument with tar_file argument.

#23 tsalo closed 6 years ago
1
Rename Top Level run.py

#22 akimbler closed 6 years ago
3
Remove Tar from run.py

#21 mriedel56 closed 6 years ago
1
[ENH] Update metadata fields that are kept in jsons

#20 tsalo closed 6 years ago
1
Project memory

#19 mriedel56 opened 6 years ago
6
Implement MRIQC on individual functional runs

#18 mriedel56 closed 6 years ago
3