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lgatto
/
MSnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
http://lgatto.github.io/MSnbase/
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error writing mzML file
#553
ricoderks
closed
6 months ago
3
recalibration
#552
ricoderks
opened
2 years ago
4
Error in reading Agilent .d files converted to .mzML via msconvert
#551
jamesrgraham
closed
6 months ago
42
fix: empty XIC plot if no data (issue #549)
#550
jorainer
closed
2 years ago
6
XIC without data in one sample
#549
hvaret
closed
2 years ago
3
Failed to add identification data
#548
Geoffreylxd
closed
2 years ago
6
Dropping file(s) without any spectra
#547
jmorim
closed
3 years ago
10
Add compareChromatograms method
#546
jorainer
closed
3 years ago
7
Can't write new MSnExp object as mzxml
#545
avcarr2
closed
2 years ago
2
Peakpicking for Chromatogram instances
#544
SumedhSankhe
closed
3 years ago
2
ProcessingStep error when importFrom Msnbase filterMz
#543
ricardo-cunha
closed
3 years ago
17
extended mzid info not importing
#542
BaylorSci
closed
3 years ago
6
issue with loading MSnbase package
#541
yaare
closed
3 years ago
1
possibility to use filterRt for multiple regions
#540
stanstrup
closed
6 months ago
3
Segmentation fault on install
#539
urielrosen
closed
6 months ago
10
refactor: move ProcessingStep to ProtGenerics
#538
jorainer
closed
3 years ago
3
Default values in calculateFragments
#537
plbaldoni
closed
3 years ago
1
ci: manually install magick
#536
jorainer
closed
3 years ago
0
Add several methods for Chromatogram and MChromatograms objects
#535
jorainer
closed
3 years ago
2
Small change to formatRt
#534
vdtoorn
closed
3 years ago
2
-add TMT16plex
#533
MiguelCos
closed
3 years ago
3
Slot for scan rate in Msnbase object
#532
jmorim
closed
3 years ago
2
Error in addIdentificationData
#531
InduKhatri
closed
3 years ago
8
More columns than column names
#530
ortizmateujuan
closed
3 years ago
2
Scan index in writeMgfData and readMgfData
#529
plbaldoni
closed
3 years ago
4
Re-using externalised functions
#528
lgatto
closed
3 years ago
0
readMSData to read additional data
#527
Adafede
closed
3 years ago
9
Coerce Spectra to MSnExp
#526
lgatto
closed
3 years ago
6
Clarification on acquisitionNum vs scanIndex
#525
stanstrup
closed
3 years ago
3
Fixed some consistency in the reporting.
#524
stanstrup
closed
3 years ago
0
feat: add extractSpectraData function
#523
jorainer
closed
3 years ago
3
refactor: add parameter ppm to combineSpectraMovingWindow
#522
jorainer
closed
3 years ago
9
Smoothing of chromatogram in retention time domain: `combineSpectraMovingWindow`
#521
breidan
closed
3 years ago
4
intact protein - MW determination
#520
cbroeckl
closed
3 years ago
6
refactor: add splitByFile,OnDiskMSnExp
#519
jorainer
closed
3 years ago
0
Toggle warnings from empty spectra for filterMz/trimMz_Spectrum
#518
jmorim
closed
3 years ago
10
Error by using readSRMData: Unknown binary data type.
#517
luuulu
closed
6 months ago
17
Rename Spectra and Chromatograms
#516
jorainer
closed
4 years ago
9
Rename Chromatograms?
#515
jorainer
closed
3 years ago
3
Rename Spectra to MSpectra to avoid confusion with the Spectra package
#514
jorainer
closed
3 years ago
0
Mixed imputation
#513
Mahmoudhallal
closed
6 months ago
1
Fix import of mzTab from MS-Dial
#512
sneumann
closed
4 years ago
2
Avoid reading in mzTab twice
#511
sneumann
closed
4 years ago
0
readMgfData as chunks of file
#510
videlc
closed
3 years ago
9
tic function memory leak?
#509
antonwnk
closed
4 years ago
5
write Spectra object to mgf
#508
ricoderks
closed
3 years ago
16
COM= was written twice in the mgf file
#507
ricoderks
closed
4 years ago
0
Only if con is character (filename) create a file connection.
#506
ricoderks
closed
4 years ago
2
error writeMgfData when using connections
#505
ricoderks
closed
4 years ago
2
filter by filterstring
#504
tekitch
closed
4 years ago
2
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