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lucapinello
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CRISPResso
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
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Alignment error, please check your input
#55
StevenVB12
closed
5 years ago
0
Fix colors of bases in allele plot
#54
rakarnik
closed
5 years ago
0
Longer Allele Sequences
#53
amarcog
closed
5 years ago
4
CRISPResso command failed (return value 127) on region #0:
#52
pankajki
closed
5 years ago
1
Last stage error Error with FLASH for CRISPRessoPooled.py
#51
bilalSarwar2020
closed
5 years ago
5
Appears to be counting reads with deletions as unedited
#50
AGRaeside
closed
5 years ago
1
ERROR: Flash failed to run, please check the log file.
#49
madeleinesitton
closed
5 years ago
1
Left-aligning option
#48
dfajar2
closed
5 years ago
7
modify the python scripts for availability to other CRISPR systems
#47
tiramisutes
closed
6 years ago
1
ERROR: The amplicons should be all distinct!
#46
tiramisutes
closed
6 years ago
1
[FLASH] ERROR: Maximum overlap (-173) cannot be less than the minimum overlap (4).
#45
hffqyd
closed
6 years ago
1
Error while generating plots with Cpf1 data
#44
dfajar2
closed
6 years ago
4
fixed indent
#43
kclem
closed
6 years ago
0
Added --max_paired_end_reads_overlap parameter for FLASH
#42
kclem
closed
6 years ago
0
Run for a long times
#41
tiramisutes
closed
6 years ago
3
Bug fixes and debug functionality - upgrade to 1.0.11
#40
kclem
closed
6 years ago
0
free variable 'df_genes' referenced before assignment in enclosing scope", u'occurred at index Site1'
#39
tiramisutes
closed
6 years ago
7
CRIPRessoPooled - query
#38
frankbioinfo
closed
6 years ago
1
FLASH: Low Percent Combined
#37
Transmystical
closed
6 years ago
2
Use --min_identity_score for read vs amplicon
#36
rakarnik
closed
6 years ago
3
Front End Code
#35
ksindy
closed
6 years ago
4
Error "'numpy.int64'
#34
amarcog
closed
6 years ago
7
Unexpected error: invalid literal for int() with base 10: '0rc1'
#33
strohmjeff
closed
6 years ago
10
Bug in reporting Quantification_of_editing_frequency.txt when np.sum produces nan.
#32
kclem
closed
6 years ago
1
CRISPRessoPool update and debug features
#31
kclem
closed
6 years ago
0
mutation frequency plot
#30
frankbioinfo
closed
6 years ago
1
ERROR: If using all scalar values, you must pass an index
#29
strohmjeff
closed
6 years ago
3
crispressoweb dockerfile
#28
chriscatalyticds
closed
6 years ago
1
Different results from online and command line CRISPResso with same data and parameters
#27
miikaelf
closed
6 years ago
5
No reads aligned?
#26
milw
closed
7 years ago
4
Make installing of external dependencies optional
#25
jrderuiter
closed
7 years ago
2
Error with FLASH for CRISPResso
#24
mtoetzl
closed
7 years ago
13
no of reads from pie chart and alleles do not add up
#23
frankbioinfo
closed
7 years ago
2
Running CRISPResso - query
#22
frankbioinfo
closed
7 years ago
1
If guide seq is wrong, do not crash instead run without guide seq
#21
Imoteph
closed
7 years ago
3
Trimming adapter sequences that are not Nextera
#20
nanez20
closed
7 years ago
1
Issue with ONLY AMPLICONS running mode
#19
amarcog
closed
7 years ago
6
Python error running locally
#18
danielnavarrogomez
closed
7 years ago
2
Trailing whitespace in the amplicon sequence is not tolerated
#17
martinaryee
opened
7 years ago
0
Specify the FLASH --max-overlap parameter?
#16
martinaryee
closed
7 years ago
4
Window around cleavage position seems to be asymmetrical
#15
mdyckmanns
closed
7 years ago
7
Correct path in docker hub and pull
#14
richstoner
closed
7 years ago
1
RuntimeWarning: invalid value encountered in divide
#13
mmcneill123
closed
7 years ago
6
Amplicon Sequence
#12
steve-shan
closed
7 years ago
14
Flash failed to run flash
#11
steve-shan
closed
7 years ago
1
Readme fixes
#10
ppcherng
closed
7 years ago
1
CRISPResso available on bioconda
#9
tomkinsc
closed
7 years ago
1
Tests
#8
magniff
closed
8 years ago
4
Error with Flash
#7
murphycj
closed
8 years ago
2
ERROR: 'transform' must be an instance of 'matplotlib.transform.Transform'
#6
MLKaufman
closed
8 years ago
9
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