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mkirsche
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Jasmine
Jasmine: SV Merging Across Samples
MIT License
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Inquiry on the Determination of Representative Structural Variants in Merged VCF Sets
#62
Flooooooooooooower
opened
2 months ago
0
Jasmine Merging of Samples called by Manta and Smoove followed by multi-sample merging.
#61
Lukecassar21
opened
3 months ago
0
Question regarding overlap when mergind VCF of multiple samples
#60
LucaBertoli
opened
5 months ago
0
Jasmine produces invalid VCF
#59
zeeev
opened
7 months ago
1
allow_intrasample throws exceptions
#58
jasonbhn
opened
1 year ago
1
Problem with indexing merged vcf file
#57
athenasyarifa
opened
1 year ago
1
About HG002 high-confidence de novo SVs
#56
songbowang125
opened
1 year ago
1
Question for input
#55
hanpengluo
opened
1 year ago
0
About Jasmine pipeline
#54
vicbp1
opened
1 year ago
0
Did the editDistanceSimilarity miscalculate?
#53
CAShuangchao
opened
1 year ago
0
end conversion to start+length for INS
#52
jacket-myCat
closed
1 year ago
1
snakemake pipeline rule merge_sorted
#51
weilu1998
closed
1 year ago
0
parameter to add variant caller name in the merged file ?
#50
lmanchon
opened
1 year ago
0
java.lang.NullPointerException
#49
nvnieuwk
opened
1 year ago
1
Index -1 out of bounds for length 0
#48
Qijie0615
opened
1 year ago
0
SV not correctly merged
#47
wjwei-handsome
opened
1 year ago
1
Correctly parseInt the SUPP entry, not the string itself.
#46
ASLeonard
opened
1 year ago
1
a sequence name but not an actual sequence
#45
aojielian
opened
1 year ago
1
SV not merged correctly
#44
jiadong324
opened
1 year ago
3
Possible error in handling iris temp output paths
#43
SorenKarst
opened
1 year ago
0
Exception in thread "Thread-6" java.lang.OutOfMemoryError: Java heap space
#42
jigaoxiang
opened
2 years ago
1
Fail to merge SVs when STRANDS not set in one file
#41
edg1983
opened
2 years ago
0
Help to set the best jasmine parameters
#40
lgmgeo
opened
2 years ago
0
--dup_to_ins
#39
zhqduan
closed
2 years ago
2
What means "GT" in the FILTER field
#38
zhqduan
closed
2 years ago
2
Index 1 out of bounds for length 1
#37
mjko1210
opened
2 years ago
14
Jasmine doesn't work with Smoove
#36
teresa1997
closed
2 years ago
3
Java OutOfMemoryError
#35
prometheusloong
closed
2 years ago
2
SUPP category in the output
#34
miyakokodama
closed
2 years ago
2
SUPP INFO tag should be Integer
#33
fgvieira
closed
2 years ago
1
min_overlap
#32
Qijie0615
closed
2 years ago
1
Support for vcf.gz files
#31
fgvieira
opened
2 years ago
3
VCF (caller) concordance analysis using jasmine
#30
am8265
closed
2 years ago
1
the parameter of --dup_to_ins
#29
Gongjiao94
closed
2 years ago
1
How are LEN and AVG_LEN calculated ?
#28
clairemerot
closed
2 years ago
3
Genotype columns
#27
carlschreck
closed
2 years ago
2
--normalize_type creates invalid VCF for translocations
#26
wdecoster
opened
2 years ago
2
Possible incorrect merging of breakend variants
#25
scwatts
closed
2 years ago
4
Support for different variant caller?
#24
zhemingfan
closed
2 years ago
2
merge not behaving as expected for DUP
#23
kmurphy902
closed
3 years ago
3
Jasmine "missing" a variant?
#22
kmegq
closed
2 years ago
2
Continue Jasmine from where it failed
#21
mariesaitou
closed
3 years ago
12
Corrupted VCF when first VCF is empty
#20
wdecoster
closed
3 years ago
4
documentation help
#19
brentp
closed
3 years ago
7
changing number of threads from 2 to 4 or 8
#18
santoshatanur
closed
3 years ago
21
Altered genotype?/handling translocations
#17
mariesaitou
closed
3 years ago
9
Merge accross tools instead of merging accross samples
#16
clairemerot
closed
3 years ago
2
Error: A JNI error has occurred,
#15
jigaoxiang
closed
3 years ago
5
Keep singletons in the merged file
#14
mariesaitou
closed
3 years ago
5
Merge SVs with high percentage of overlap
#13
cai1991
closed
3 years ago
4
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