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vastgroup
/
vast-tools
A toolset for profiling alternative splicing events in RNA-Seq data.
MIT License
77
stars
28
forks
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How to determine that a variable clipping event is a difference variable clipping event?
#122
happypiggyzjx
opened
2 months ago
0
Selecting microexons
#121
pgupta3005
closed
2 months ago
3
High reads that failed to align percentage
#120
sav0016
closed
2 months ago
1
Confusing numbering in ALTD/ALTA events
#119
UBrau
opened
4 months ago
2
Is it possible to handle long-read RNA-seq data with VAST-TOOL?
#118
happypiggyzjx
closed
2 months ago
1
diff update
#117
UBrau
closed
8 months ago
0
fix refactoring typo that prevents correct estimates in diff module
#116
hmehlan
closed
10 months ago
1
binom.test error: 'x' must be nonnegative and integer
#115
ferngonz
closed
11 months ago
3
combine problem reading RI_MakeTablePIR.R
#114
mponcecic
closed
1 year ago
11
Bowtie Problem
#113
liniguez
opened
1 year ago
0
Number of reads in fastq files not detected correctly.
#112
Ni-Ar
opened
1 year ago
6
Coordinate system zero- or one-based?
#111
Ni-Ar
closed
1 year ago
1
add new optparse version in Dockerfile
#110
toniher
closed
1 year ago
0
Test again with a wait in Github action
#109
toniher
closed
1 year ago
0
Update docker-latest.yml
#108
toniher
closed
1 year ago
0
Update CI/CD and fixing Dockerfile missing VERSION
#107
toniher
closed
1 year ago
0
Update Docker build to make it work with last changes
#106
toniher
closed
1 year ago
0
*** caught illegal operation *** address 0x2aaf6c5c56f0, cause 'illegal operand'
#105
msubirana
closed
2 years ago
3
Align issue "Failed in RunDBS_1.pl! at /usr/local/vast-tools/bin/RunDBS_1.pl"
#104
neusmf
closed
1 year ago
4
nanopore long read RNA seq
#103
charlinejonson
closed
2 years ago
1
species are not in vastdb
#102
Yichel518
opened
3 years ago
1
Upgraded Rocker version and migrated CI
#101
toniher
closed
3 years ago
0
issue with 'align'
#100
yongshes
closed
2 years ago
7
PE-150 RNA-Seq data: Trimming RNAseq reads to 50 nt sequences
#99
huangwb8
closed
3 years ago
1
Compare vs Diff
#98
juliana-chu
closed
1 year ago
2
Error with psiplot
#97
juliana-chu
closed
2 years ago
6
Wrong Species Selected
#96
juliana-chu
closed
3 years ago
2
Proxy error when downloading db
#95
laurie-tonon
closed
3 years ago
1
question about read coverage and covariate adjustment
#94
imendizabalCIC
closed
3 years ago
4
Improve README.md
#93
nuno-agostinho
closed
4 years ago
0
vast-tools diff failed and vast-tools compare_expr issue
#92
flolebill
closed
3 years ago
15
vast-tools combine failed
#91
flolebill
closed
4 years ago
10
Remove deprecated with_lib() #89
#90
kcha
closed
4 years ago
0
with_lib deprecated
#89
UBrau
closed
4 years ago
0
low alignment rates
#88
imendizabalCIC
closed
4 years ago
3
vast-tools merge error in last stable version (v2.4.0)
#87
PedroBarbosa
closed
4 years ago
23
Fixing Docker and Travis build avoiding user prompt with install.R --quiet option
#86
toniher
closed
4 years ago
0
diff module: MV calculation does not work in the provided containers?
#85
AngryMaciek
closed
4 years ago
3
Running as a container in README
#84
toniher
closed
5 years ago
0
Increase travis time for downloading file
#83
toniher
closed
5 years ago
0
Update rocker version for Dockerfile
#82
toniher
closed
5 years ago
0
alternative splicing in one group
#81
CLeib
closed
5 years ago
2
How to filter different AS event in two group sample outputted by diff module
#80
kehuangke
closed
5 years ago
7
Add quality filtering to diff
#79
UBrau
closed
4 years ago
3
Fixed [issue #77]: diff now outputs to file instead of STDOUT; new op…
#78
UBrau
closed
5 years ago
0
diff output
#77
UBrau
closed
5 years ago
0
Changing toniher -> vastgroup
#76
toniher
closed
5 years ago
0
Added Docker and Continuous integration with Travis
#75
toniher
closed
5 years ago
0
Dockerfile
#74
fgypas
closed
6 years ago
8
Iss72
#73
UBrau
closed
6 years ago
1
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