vastgroup vast-tools issues

vastgroup / vast-tools

A toolset for profiling alternative splicing events in RNA-Seq data.

MIT License

77 stars 29 forks source link

issues

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#126 andresgordoortiz closed 3 days ago
0
Circumventing Read Length Limitation in vast-tools

#125 imendizabalCIC closed 2 weeks ago
2
assemblies for canine

#124 wobar1 opened 3 weeks ago
0
Update R Version to 4.0.0 due to packages depending on it

#123 andresgordoortiz closed 1 week ago
0
How to determine that a variable clipping event is a difference variable clipping event?

#122 happypiggyzjx opened 3 months ago
0
Selecting microexons

#121 pgupta3005 closed 4 months ago
3
High reads that failed to align percentage

#120 sav0016 closed 3 months ago
1
Confusing numbering in ALTD/ALTA events

#119 UBrau opened 5 months ago
2
Is it possible to handle long-read RNA-seq data with VAST-TOOL?

#118 happypiggyzjx closed 3 months ago
1
diff update

#117 UBrau closed 9 months ago
0
fix refactoring typo that prevents correct estimates in diff module

#116 hmehlan closed 12 months ago
1
binom.test error: 'x' must be nonnegative and integer

#115 ferngonz closed 1 year ago
3
combine problem reading RI_MakeTablePIR.R

#114 mponcecic closed 1 year ago
11
Bowtie Problem

#113 liniguez opened 1 year ago
0
Number of reads in fastq files not detected correctly.

#112 Ni-Ar opened 1 year ago
6
Coordinate system zero- or one-based?

#111 Ni-Ar closed 1 year ago
1
add new optparse version in Dockerfile

#110 toniher closed 2 years ago
0
Test again with a wait in Github action

#109 toniher closed 2 years ago
0
Update docker-latest.yml

#108 toniher closed 2 years ago
0
Update CI/CD and fixing Dockerfile missing VERSION

#107 toniher closed 2 years ago
0
Update Docker build to make it work with last changes

#106 toniher closed 2 years ago
0
*** caught illegal operation *** address 0x2aaf6c5c56f0, cause 'illegal operand'

#105 msubirana closed 2 years ago
3
Align issue "Failed in RunDBS_1.pl! at /usr/local/vast-tools/bin/RunDBS_1.pl"

#104 neusmf closed 1 year ago
4
nanopore long read RNA seq

#103 charlinejonson closed 2 years ago
1
species are not in vastdb

#102 Yichel518 opened 3 years ago
1
Upgraded Rocker version and migrated CI

#101 toniher closed 3 years ago
0
issue with 'align'

#100 yongshes closed 2 years ago
7
PE-150 RNA-Seq data: Trimming RNAseq reads to 50 nt sequences

#99 huangwb8 closed 3 years ago
1
Compare vs Diff

#98 juliana-chu closed 1 year ago
2
Error with psiplot

#97 juliana-chu closed 2 years ago
6
Wrong Species Selected

#96 juliana-chu closed 3 years ago
2
Proxy error when downloading db

#95 laurie-tonon closed 4 years ago
1
question about read coverage and covariate adjustment

#94 imendizabalCIC closed 3 years ago
4
Improve README.md

#93 nuno-agostinho closed 4 years ago
0
vast-tools diff failed and vast-tools compare_expr issue

#92 flolebill closed 3 years ago
15
vast-tools combine failed

#91 flolebill closed 4 years ago
10
Remove deprecated with_lib() #89

#90 kcha closed 4 years ago
0
with_lib deprecated

#89 UBrau closed 4 years ago
0
low alignment rates

#88 imendizabalCIC closed 4 years ago
3
vast-tools merge error in last stable version (v2.4.0)

#87 PedroBarbosa closed 4 years ago
23
Fixing Docker and Travis build avoiding user prompt with install.R --quiet option

#86 toniher closed 4 years ago
0
diff module: MV calculation does not work in the provided containers?

#85 AngryMaciek closed 4 years ago
3
Running as a container in README

#84 toniher closed 5 years ago
0
Increase travis time for downloading file

#83 toniher closed 5 years ago
0
Update rocker version for Dockerfile

#82 toniher closed 5 years ago
0
alternative splicing in one group

#81 CLeib closed 5 years ago
2
How to filter different AS event in two group sample outputted by diff module

#80 kehuangke closed 5 years ago
7
Add quality filtering to diff

#79 UBrau closed 4 years ago
3
Fixed [issue #77]: diff now outputs to file instead of STDOUT; new op…

#78 UBrau closed 5 years ago
0
diff output

#77 UBrau closed 5 years ago
0