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Clinical-Genomics
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demultiplexing
To keep scripts associated with execution of the Illumina demultiplexing pipeline
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fix if statement
#122
barrystokman
closed
3 years ago
2
Fix empty sample sheet test in novaseq demux script
#121
barrystokman
closed
3 years ago
5
Check for CopyComplete.txt to prevent duplicate reads in analysis
#120
barrystokman
closed
3 years ago
1
Poetry
#119
henrikstranneheim
closed
3 years ago
4
Rm travis
#118
henrikstranneheim
closed
3 years ago
1
GitHub actions
#117
henrikstranneheim
closed
3 years ago
2
Update CODEOWNERS
#116
henrikstranneheim
closed
3 years ago
1
feat(docs): Added branch model
#115
henrikstranneheim
closed
3 years ago
0
Fix/demux mail
#114
barrystokman
closed
3 years ago
3
add line to error trap
#113
barrystokman
closed
3 years ago
2
feat(New hiseqx validation functions)
#112
karlnyr
closed
3 years ago
9
Upgrade of NovaSeq Control Software
#111
AnnaZetterlund
closed
3 years ago
8
temp fix for path to dummy indices
#110
barrystokman
closed
4 years ago
1
Update requirements.txt
#109
barrystokman
closed
4 years ago
1
fix path issue
#108
barrystokman
closed
4 years ago
1
Fix environments/containers on Thalamus
#107
barrystokman
closed
3 years ago
1
Derive novaseq basemask from RunParameters.xml
#106
barrystokman
closed
4 years ago
3
Fix PyYAML yaml.load(input) Deprecation
#105
barrystokman
closed
4 years ago
1
WIP add time stamps to remove runs and remove demux logs
#104
barrystokman
closed
1 year ago
0
Fix empty samplesheet
#103
barrystokman
closed
4 years ago
13
WIP Demultiplexing overhaul
#102
barrystokman
closed
3 years ago
1
Update demux pr template and code owners
#101
barrystokman
closed
4 years ago
1
Fix empty samplesheet
#100
barrystokman
closed
4 years ago
0
Use correct basemask for demultiplexing NIPT runs from the NovaSeq
#98
barrystokman
closed
4 years ago
0
WIP Allow custom columns in the sample sheet when adding demultiplexing stats to the cgstats database.
#97
barrystokman
closed
4 years ago
1
Parse NIPT basemask from RunInfo.xml
#96
barrystokman
closed
4 years ago
2
fix: run once and only once
#95
ingkebil
closed
4 years ago
3
Add jobs to CI build
#94
patrikgrenfeldt
closed
3 years ago
5
Add qos to xdemuxtiles.bash
#93
ingkebil
closed
4 years ago
1
iseq sample sheet: index2 is reverse complement of index2 found in LIMS
#92
barrystokman
closed
5 years ago
6
Automatic demultiplexing of iseq runs
#91
patrikgrenfeldt
closed
5 years ago
11
3.2 iSeq Sample sheet in the correct format
#90
emiliaol
closed
4 years ago
0
3.4 Automatic demultiplexing of iSeq runs
#89
emiliaol
closed
4 years ago
0
3.2 iSeq Sample sheet available on iSeq
#88
emiliaol
closed
5 years ago
1
Exclude Undetermined files from rsync
#87
ingkebil
closed
5 years ago
4
Pre-fetch SampleSheet
#86
ingkebil
closed
3 years ago
4
Update .travis.yml
#85
ingkebil
closed
5 years ago
1
Fix: Add overwriting of destination
#84
ingkebil
closed
3 years ago
5
Add account for xpostface
#83
ingkebil
closed
4 years ago
6
X hasta
#82
ingkebil
closed
5 years ago
9
Rm sync to rasta
#81
ingkebil
closed
5 years ago
1
Add iSeq retrieval
#80
ingkebil
closed
5 years ago
12
Sampelsheet class is refactored
#79
ingkebil
closed
5 years ago
1
iSeq sample sheets are created using `demux sheet fetch`
#78
emiliaol
closed
5 years ago
0
HiSeqX is demultiplexing on Hasta
#77
ingkebil
closed
5 years ago
2
Add padding of d8 indexes in 'demux sheet fetch' if no d10 indexes exist.
#76
barrystokman
closed
5 years ago
1
Harder faster forever after
#75
ingkebil
closed
5 years ago
0
[WIP] Novaseq hasta
#74
ingkebil
closed
3 years ago
3
Rm delivered emails
#73
ingkebil
closed
5 years ago
0
Rm msg for dual 10 only with padding
#72
ingkebil
closed
5 years ago
2
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