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Trinotate
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Trinotate.github.io
web documentation for Trinotate
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use trinotate without signalP and TMHMM ouput files
#71
nargisbashir
opened
3 months ago
1
sqlite database ok, but report is empty
#70
matevzl533
opened
5 months ago
10
Trinotate Installation
#69
nisntraj
opened
7 months ago
3
Error: column transcript_id is not unique
#68
vccarneiro
closed
1 year ago
3
prot_id and related columns do not export
#67
FarrahKhan1400
opened
2 years ago
2
Suggestion: Auto pipeline transdecoder.pep
#66
lucaskbobadilla
opened
2 years ago
0
Unable to create boilerplate sqlite
#65
hayden-waller
opened
2 years ago
1
Can I add the annotation of new genotypes to an already built database?
#64
felipevzps
closed
2 years ago
2
Gene/transcript map for non-Trinity assembly
#63
incoreygible
closed
2 years ago
2
perl: warning: Setting locale failed.
#62
glmaala
opened
2 years ago
1
No eggnog annotation in Trinotate report excel !
#61
ppdpg
closed
2 months ago
2
Error 404 with Build_Trinotate_Boilerplate_SQLite_db.pl connecting to data.broadinstitute.org
#60
mmcardozo
opened
2 years ago
1
Trinotate SQlite error
#59
miguel1cifu
opened
2 years ago
0
Trinotate Annotation Report: No PFAM
#58
brittonstrickland
closed
2 years ago
23
Trinotate Sqlite: Error: column transcript_id is not unique Error, cmd: echo "pragma journal_mode=memory
#57
geethavenk
opened
3 years ago
3
DBD::SQLite problem running Build_Trinotate_Boilerplate_SQLite_db.pl
#56
Brent-Saylor-Canopy
opened
3 years ago
4
Error while running hmmscan with autoTrinotate.pl
#55
pbluescript
opened
3 years ago
2
Question about Build_Trinotate_Boilerplate_SQLite_db.pl
#54
Genan-blur
opened
3 years ago
4
Issues with the Trinotate.sqlite file in TrinotateWEB
#53
bm-silva
opened
3 years ago
0
Trinotate_report.xls
#52
berumeng
opened
3 years ago
4
Error, cmd: /Trinotate line 126.
#51
zhang144999
opened
3 years ago
0
Error at ../autoTrinotate.pl line 109
#50
sivajean
opened
3 years ago
0
can we import direct isoform to cDNA blastn alignment results
#49
splaisan
closed
3 years ago
2
xls report does not open - formatting error
#48
rafinhacp
closed
3 years ago
2
Issue uploading isoform expression data
#47
rafinhacp
closed
3 years ago
1
problems with Trinotate and sqlite
#46
rgast
opened
3 years ago
1
can't exec superScaffoldGenerator.pl
#45
niconm89
opened
3 years ago
0
SignalP 4.1 silently fails with default Transdecoder fasta headers
#44
halocaridina
closed
3 years ago
6
Unable to locate SQLite Database file
#43
williamsonjpa
closed
3 years ago
3
Question about Trinotate.web
#42
Genan-blur
opened
3 years ago
8
Can I reuse the trinotate.sqlite database across multiple assemblies from different samples?
#41
davidecarlson
closed
3 years ago
2
Hard to understand KEGG annotations
#40
Thijmen18
opened
4 years ago
3
Software error:Can't locate HTML/Template.pm in @INC (you may need to install the HTML::Template module)
#39
sraj214
opened
4 years ago
4
NOG database is not available - link is dead
#38
jgrzadziel
opened
4 years ago
2
Version of UniProt and Pfam databases
#37
GatorShan
opened
4 years ago
3
Unknown Platform : Running RNAHMMER
#36
sraj214
opened
4 years ago
3
Faulty eggnog database url
#35
jlastoll
closed
4 years ago
1
Issue with parsing names of blast hits in the final report table
#34
jcoludar
closed
4 years ago
6
details for report field sprot_Top_BLASTX_hit
#33
sdwien
opened
4 years ago
1
cannot locate report database file
#32
depac
opened
4 years ago
2
integrate sigP 5.0
#31
brianjohnhaas
opened
4 years ago
2
problem with tmhmm
#30
ghost
closed
4 years ago
1
sample files.txt preparation for import_expression_and_DE_results.pl
#29
giggu98
closed
4 years ago
3
Annotation Summary to gtf/gff
#28
austinhpatton
opened
4 years ago
1
problem with sqlite
#27
JiaZhong28
opened
4 years ago
1
GO annotation
#26
JiaZhong28
closed
4 years ago
0
Starting fasta file
#25
mclec
opened
4 years ago
0
SignalP link in wiki docs defaults to v5.0
#24
bifxcore
opened
4 years ago
0
Loading Swiss-Prot database is throwing format warning
#23
bifxcore
closed
4 years ago
2
Installation doc update rnammer test
#22
bifxcore
opened
4 years ago
0
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