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WormBase
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genedesc_generator
Automated gene descriptions generator for model organism databases
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Remove GO terms with "obsolete" in descriptions
#68
rankishore
closed
3 months ago
2
Remove capitalization for "Contributes" in human function description module in C. elegans descriptions
#67
rankishore
closed
5 months ago
1
Remove capitalization from "Contributes to" in human functional sentences in C. elegans
#66
valearna
closed
5 months ago
1
Move Human function module in C. elegans WB descriptions after the orthology sentence.
#65
valearna
closed
5 months ago
1
WS291 automated descriptions ace file has a bug
#64
rankishore
closed
1 year ago
3
Add paper evidence with DATABASE paper reference for WB descriptions
#63
valearna
opened
1 year ago
3
Change sentence template for protein domain sentence
#62
rankishore
opened
1 year ago
3
Duplicates in protein domain sentences
#61
rankishore
opened
1 year ago
2
Use OAKlib instead of ontobio
#60
valearna
opened
1 year ago
0
Use GO CAM to generate descriptions
#59
valearna
opened
1 year ago
0
Delete annotations if a negative annotation exists for the same subject - object
#58
valearna
opened
1 year ago
0
Look into male-specific anatomical entity sentences
#57
valearna
opened
1 year ago
0
Deploy gene description pipeline on AWS
#56
valearna
opened
1 year ago
0
Do not use elegans VC2010 gene identifiers in non-elegans species orthology files
#55
rankishore
closed
1 year ago
1
Include C. briggase expression cluster data for WS287
#54
rankishore
closed
1 year ago
1
Some protein domain descriptions are empty
#53
valearna
closed
3 years ago
1
Inconsistent capitalization for sister species and info poor sentences
#52
valearna
closed
3 years ago
1
Switch to GAF 2.2
#51
valearna
closed
3 years ago
1
synchronize configuration files between alliance and wormbase
#50
valearna
closed
3 years ago
1
Tissue expression-separate cells and tissues in the sentence
#49
rankishore
opened
5 years ago
0
create a script to generate a tsv table with the numbers in __number_of_concise_descriptions files for all files in the WB folder
#48
valearna
opened
5 years ago
0
WS272 pre-release file: Human gene names need capitalization in elegans descriptions
#47
rankishore
closed
5 years ago
1
WS272 pre-release file: some elegans gene names in non-elegans species descriptions need capitalization
#46
rankishore
closed
5 years ago
1
Move 'male' AO term to the end of the tissue expression sentence
#45
rankishore
closed
5 years ago
1
WS272 pre-release file bug: Capitalization in non-elegans descriptions
#44
rankishore
closed
5 years ago
1
add key terms for tissue expression (both from expression cluster and anatomy)
#43
valearna
closed
1 year ago
0
there is a drop of ~1000 cases in the number of tissue expression sentences from WS269 to WS271
#42
valearna
closed
5 years ago
0
when expression sentences are trimmed to "the cell", the resulting description is wrong
#41
valearna
closed
5 years ago
1
remove terms ids from json report files
#40
valearna
closed
5 years ago
0
create precanned module functions to generate sentences for common modules
#39
valearna
closed
5 years ago
0
Orthology module: change template for C. elegans genes
#38
rankishore
closed
5 years ago
0
Orthology module: Remove human gene family information
#37
rankishore
closed
5 years ago
0
remove gene name from descriptions
#36
valearna
closed
5 years ago
0
add protein domain information sentence if there is no GO data for the focus gene, with or w/o human GO data
#35
valearna
closed
5 years ago
0
Use acedb as source for expression cluster sentences
#34
rankishore
closed
3 years ago
1
create new script to generate xml page for J to index directories and files
#33
valearna
closed
5 years ago
4
Include chemicals in expression cluster chemical regulation sentence based on popularity
#32
rankishore
closed
3 years ago
1
Trim expression cluster anatomy terms for non-elegans species
#31
rankishore
closed
5 years ago
0
How and when to include expression cluster data
#30
rankishore
closed
5 years ago
0
Change template for gene regulation sentences
#29
valearna
closed
5 years ago
0
Create report for genes: compare numbers in data source and numbers in descriptions file
#28
rankishore
opened
5 years ago
2
Chemical regulation expression cluster data missing for WS269 prerelease file
#27
rankishore
closed
5 years ago
0
Orthology data missing for some genes
#26
rankishore
closed
5 years ago
0
WS269 prerelease files bug: related to phrase 'tiling array' in expression cluster sentences
#25
rankishore
closed
5 years ago
0
code refactoring
#24
valearna
closed
5 years ago
1
Include gene regulation sentences for only information poor genes
#23
rankishore
closed
5 years ago
0
Include chemical regulation only for information poor genes
#22
rankishore
closed
5 years ago
3
Tissue expression: anatomy term exclusions and renaming
#21
rankishore
closed
5 years ago
0
Tissue expression module: how to include data
#20
rankishore
closed
5 years ago
0
Data types included, priority and placement
#19
rankishore
closed
5 years ago
1
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