YuanTian1991 ChAMP issues

YuanTian1991 / ChAMP

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issues

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Reading 450K annotation throws "Argument 'dim.' must be an integer vector of length two.

#53 DDL-NOVOSLabs closed 1 month ago
1
Beta valued excel file

#52 TahirahYasmin opened 2 months ago
0
Request for support of new Illumina 270K methylation chip

#51 shenzhongjun opened 3 months ago
0
GSEA analysis with ChAMP

#50 yiyi1247 opened 3 months ago
0
Error in pd file

#49 amiesb closed 3 months ago
0
champ.DMP output with significant positions, but output has zero lines

#48 biofuture opened 4 months ago
0
EPICv2 still not working?

#47 justinejacobi opened 6 months ago
0
Different result from champ.filter() function with the same dataset

#46 thscandolara opened 7 months ago
0
Error in Champ.DMP()

#45 debangana234 opened 8 months ago
0
关于导入probe.features.epicv1

#44 shenzhongjun opened 8 months ago
1
Bug: In champ.import (ChAMP "2.30.0")

#43 MitaliKatoch opened 10 months ago
2
ChAMP data and EPIC v2 arrays

#42 keenhl opened 11 months ago
1
Apply combat and refbase on EPIC v2 data

#41 keenhl opened 11 months ago
0
champ.filter Filtering probes on EPICv1

#40 robinjugas opened 11 months ago
1
Check of class of beta matrix in champ.SVD returns error since R 4.0.0

#39 sarah-voisin opened 1 year ago
0
myNorn is called beta in champ.SVD

#38 berrera opened 1 year ago
0
EPICv2 chip not supported

#37 shenzhongjun opened 1 year ago
7
Error with champ.CNA processing

#36 thscandolara opened 1 year ago
0
Fix bug in filter function when autoimpute is FALSE

#35 YuanTian1991 opened 1 year ago
0
Replace EstDimRMT with EstDimRMTv2 across all function

#34 YuanTian1991 opened 1 year ago
0
Bad error handling when no diff results reported

#33 ShixiangWang opened 1 year ago
0
Debugging champ.norm

#32 iskandari opened 1 year ago
1
Update champ.SVD.R to work with R >= 4.0

#31 voudiou opened 1 year ago
0
Add gene change direction for ebGSEA genes

#30 YuanTian1991 opened 1 year ago
0
Bug Report on champ.DMR

#29 HuangRuocheng opened 2 years ago
0
champ.EpiMod function not found

#28 drhmoosavi opened 2 years ago
3
Information for champ.GSEA()

#27 shwetagodbole opened 2 years ago
0
Error in DMP when one sample group doesn't have a replicate

#26 Jojo6297 opened 2 years ago
0
champ.DMR different results which are not expected

#25 lorbaer opened 2 years ago
0
champ.reffree removed?

#24 danphillips28 opened 2 years ago
0
apply combat and refbase

#23 SofyaMa opened 2 years ago
3
Attempt to set 'rownames' on an object with no dimensions issues in `champ.DMR`and `champ.SVD`

#22 Shicheng-Guo opened 3 years ago
2
Avoid error from rowMeans() if there is only one DMP

#21 mcol opened 3 years ago
1
Use longer form of logical operators (&& and ||) in if statements.

#20 mcol opened 3 years ago
0
champ.Block, arguments must have same length, but they do

#19 bhanratt opened 3 years ago
7
Error using DMRcate function

#18 aciolfi opened 3 years ago
7
champ.norm error

#17 Morph0124 opened 4 years ago
0
DMP.GUI() error

#16 mdozmorov opened 4 years ago
1
Run champ.QC(), but it does not show different color for different sample group in dendrogram plot.

#15 lovelymaoqin opened 4 years ago
0
Use correct manifest file query

#14 prasundutta87 opened 4 years ago
0
champ.DMR() error ..... "cannot allocate vector of size 56.5 Mb"

#13 ronfinn opened 4 years ago
3
ChAMP : myNorm <- champ.norm()

#12 JulieC42 opened 4 years ago
3
champ.SVD()

#11 alliekarz opened 4 years ago
0
champ.QC() cmdscale()

#10 alliekarz closed 4 years ago
0
How to draw DMP-Gene plot without DMP.GUI?

#9 DongqiangZeng0808 opened 4 years ago
0
Added compatibility with logical pheno variables

#8 lardenoije opened 4 years ago
0
k parameter not passed on to impute.knn

#7 lardenoije opened 4 years ago
0
Different models used in DMP vs. DMRcate

#6 kdillmcfarland opened 5 years ago
0
Added Manhattan and Q-Q plot to champ.DMP

#5 rrydbirk opened 5 years ago
2
Added scree plot to champ.SVD()

#4 rrydbirk closed 5 years ago
4