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broadinstitute
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pooled-cell-painting-profiling-recipe
:woman_cook: Recipe repository for image-based profiling of Pooled Cell Painting experiments
BSD 3-Clause "New" or "Revised" License
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Revert `site_full` back to `site`
#45
gwaybio
closed
3 years ago
5
fix saturation list creation
#44
ErinWeisbart
closed
3 years ago
3
Updating paths before first weld
#43
gwaybio
closed
3 years ago
3
Different overwrite warning behavior between steps
#42
ErinWeisbart
closed
2 years ago
3
enhancement/fix needed in saturated_sites.csv
#41
gwaybio
closed
3 years ago
4
Confusing code block in 4.image-and-segmentation-qc.py
#40
gwaybio
closed
3 years ago
7
Moving image.csv processing to an earlier step
#39
gwaybio
closed
3 years ago
3
Bugs in 4.image-and-segmentation-qc.py
#38
gwaybio
closed
3 years ago
0
Cleaning up spot outputs
#37
gwaybio
closed
3 years ago
2
Add command line option to reprocess files without overwriting existing data
#36
gwaybio
opened
4 years ago
0
Splitting full site annotation in 4.image-and-segmentation-qc
#35
gwaybio
closed
3 years ago
5
First refactor effort on march to first release version 0.1
#34
gwaybio
closed
4 years ago
2
remove errant option
#33
ErinWeisbart
closed
3 years ago
1
Metadata in 7.visualize-cell-summary.py
#32
gwaybio
closed
4 years ago
1
add {plate} to graphs
#31
ErinWeisbart
closed
4 years ago
3
Preprocessing config readme
#30
ErinWeisbart
closed
4 years ago
1
Dig into alignment flag triggers in 4.image-and-segmentation-qc.py
#29
ErinWeisbart
closed
2 years ago
2
Refactor 4.image-and-segmentation-qc
#28
ErinWeisbart
closed
2 years ago
1
Adding Documentation
#27
gwaybio
closed
4 years ago
0
process_cells config mismatch
#26
ErinWeisbart
closed
4 years ago
1
Sites erroring in 2.process-cells
#25
ErinWeisbart
closed
2 years ago
7
Overwrite existing files True/False
#24
ErinWeisbart
closed
4 years ago
7
8_image-and-segmentation-qc
#23
ErinWeisbart
closed
4 years ago
9
Handle empty files
#22
ErinWeisbart
closed
4 years ago
4
fix duplication bug
#21
ErinWeisbart
closed
4 years ago
0
Write a combine batches module
#20
ErinWeisbart
opened
4 years ago
0
0./1.process-spots duplicate graphs
#19
ErinWeisbart
closed
3 years ago
6
initial draft of visualize cells
#18
ErinWeisbart
closed
4 years ago
1
Add feature select step to recipe
#17
gwaybio
closed
4 years ago
1
Adding normalize step to recipe
#16
gwaybio
closed
4 years ago
0
Normalize Single Cells by Site
#15
gwaybio
opened
4 years ago
1
Refactor single cell files and arguments
#14
gwaybio
closed
4 years ago
4
Process cells
#13
ErinWeisbart
closed
4 years ago
1
Error message for missing control_barcodes in 1.process-spots
#12
ErinWeisbart
closed
4 years ago
2
Create 0.preprocess-sites/n.determine-site-quality
#11
ErinWeisbart
closed
4 years ago
3
Prepare repository for production
#10
gwaybio
closed
4 years ago
5
Adding aggregation step to generate profile module
#9
gwaybio
closed
4 years ago
3
Adding single cell processing script
#8
gwaybio
closed
4 years ago
4
Adding Cell Painting Utility Methods
#7
gwaybio
closed
4 years ago
1
Reorganize Configuration Processing
#6
gwaybio
closed
4 years ago
2
Level of information in config.yaml files
#5
ErinWeisbart
closed
4 years ago
4
Updating Prefilter to accept no flags
#4
gwaybio
closed
4 years ago
2
Project scaffold vs workflow module
#3
shntnu
closed
4 years ago
5
Adding processing spots step in 0.preprocess-sites module
#2
gwaybio
closed
4 years ago
0
Adding Prefilter step as the first step of preprocessing sites
#1
gwaybio
closed
4 years ago
0
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