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immcantation
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presto
pRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
https://presto.readthedocs.io
GNU Affero General Public License v3.0
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Add ParseHeaders mode to copy multiple annotations into one
#44
ssnn-airr
closed
6 years ago
1
Verify vsearch compatibility
#43
ssnn-airr
closed
7 years ago
3
MaskPrimers-align edge cases are not masking correctly
#42
ssnn-airr
opened
8 years ago
6
MaskPrimers throws "Error in sibling process detected" errors during Illumina MiSeq 2x250 BCR mRNA example
#41
ssnn-airr
closed
6 years ago
6
Error with Greiff2014 V primers example
#40
ssnn-airr
closed
8 years ago
1
Add select to SplitSeq
#39
ssnn-airr
closed
7 years ago
5
Verify installation using setup.py works in Windows
#38
ssnn-airr
closed
8 years ago
2
Separate required and option arguments in help
#37
ssnn-airr
closed
7 years ago
1
Check if we can use the sequence description for the id
#36
ssnn-airr
closed
6 years ago
1
Windows sdist won't install due to junk in SOURCES.txt
#35
ssnn-airr
closed
8 years ago
1
Add ENA header support
#34
ssnn-airr
closed
6 years ago
1
Add option to rename MaskPrimers output fields
#33
ssnn-airr
closed
6 years ago
2
Add collapse action flag to PairSeq
#32
ssnn-airr
closed
6 years ago
1
Add sniff mode to ConvertHeaders
#31
ssnn-airr
closed
6 years ago
1
Update options in examples
#30
ssnn-airr
closed
8 years ago
4
Convert README to restructuredText
#29
ssnn-airr
closed
9 years ago
2
Added output filename argument
#28
ssnn-airr
closed
6 years ago
2
Add subcommand to ParseHeader that merges fields
#27
ssnn-airr
closed
9 years ago
1
Added error and median quality filters
#26
ssnn-airr
closed
6 years ago
1
Add support for input of gzip files and/or stdin
#25
ssnn-airr
closed
6 years ago
2
CollapseSeq on MakeDb
#24
ssnn-airr
closed
9 years ago
2
Need UID clustering script
#23
ssnn-airr
closed
6 years ago
3
tests failing (before and after python3 conversion)
#22
ssnn-airr
closed
9 years ago
3
Check pip version in setup.py
#21
ssnn-airr
closed
9 years ago
1
maskPrimers gapped alignment penalties
#20
ssnn-airr
closed
9 years ago
4
Change --maxmiss in BuildConsensus to only gap characters.
#19
ssnn-airr
closed
9 years ago
1
diversity calculation quality-aware ?
#18
ssnn-airr
closed
9 years ago
14
Check for usearch and muscle in PATH first
#17
ssnn-airr
closed
7 years ago
1
Reduce multiprocessing overhead
#16
ssnn-airr
opened
9 years ago
3
error during AlignSets
#15
ssnn-airr
closed
6 years ago
20
Restore pair-fail files in PairSeq
#14
ssnn-airr
closed
9 years ago
1
AssemblePairs-reference : option to fill in nt from reference for gapped stitch
#13
ssnn-airr
closed
8 years ago
7
minlen capability with MaskPrimers
#12
ssnn-airr
closed
6 years ago
2
Add concatenate action to ParseHeaders-collapse
#11
ssnn-airr
closed
9 years ago
1
"READS" in DefineClones log
#10
ssnn-airr
closed
9 years ago
2
no automatic line wrap on fasta
#9
ssnn-airr
closed
6 years ago
5
flag/capability for BuildConsensus to keep certain fields
#8
ssnn-airr
closed
9 years ago
2
Autogenerate commandline reference documentation with Sphinx
#7
ssnn-airr
closed
9 years ago
1
Improve sibling process exception checking
#6
ssnn-airr
opened
9 years ago
1
AlignSets.py fatal error in write() command (with core dump )
#5
ssnn-airr
closed
9 years ago
2
Update package to Python 3 compatibility
#4
ssnn-airr
closed
9 years ago
1
BuildConsensus log output doesn't convey --maxmiss results
#3
ssnn-airr
closed
9 years ago
1
MaskPrimers primer alignment log not displaying indels correctly
#2
ssnn-airr
closed
9 years ago
1
PairSeq is slow on large files
#1
ssnn-airr
closed
9 years ago
2
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