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jpuritz
/
dDocent
a bash pipeline for RAD sequencing
ddocent.com
MIT License
53
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41
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Patch 1
#40
pdimens
closed
5 years ago
1
gzip and core dumping
#39
pdimens
closed
6 years ago
1
Patch GNU sort assumption out or remake_reference.sh
#38
outpaddling
closed
6 years ago
1
Incorrect error prompt
#37
pdimens
closed
6 years ago
1
Change ulimit for large sample sizes
#36
rwhetten
closed
6 years ago
1
Discrepancy between dDocent_filters.sh and SNP Filtering Tutorial
#35
SheaML
closed
7 years ago
1
Fix pop_missing_filter and tutorial
#34
TomaszSuchan
closed
7 years ago
1
Fix error in tutorial and pop_missing_filter script
#33
TomaszSuchan
closed
7 years ago
0
updated vcftools compatibility
#32
chollenbeck
closed
7 years ago
1
Fixed error when providing custom NEWCUTOFF
#31
TomaszSuchan
closed
7 years ago
0
Full pull request
#30
jpuritz
closed
7 years ago
0
Updated dDocent and scripts to work with vcftools 0.1.14
#29
TomaszSuchan
closed
7 years ago
2
consider using new versions of vcftools?
#28
TomaszSuchan
closed
7 years ago
2
Suggestion: add bioconda installation instructions
#27
chollenbeck
closed
7 years ago
1
Fixed python3.5 compatibility
#26
chollenbeck
closed
7 years ago
0
Add `--without-curses` samtools ./configure in the install script
#25
isaacovercast
closed
7 years ago
2
Fixed curl command for pulling samtools
#24
ekrell
closed
7 years ago
1
Trimmomatic SE with PE adapters
#23
cfriedline
closed
5 years ago
3
URLs with '?' need to be quoted/escaped with zsh+curl
#22
cfriedline
closed
7 years ago
1
installation instructions
#21
kgturner
closed
7 years ago
2
dDOCENT on HPC
#20
GregBioGenomics
closed
7 years ago
0
releases tags?
#19
pescobar
closed
7 years ago
0
Update dDocent
#18
jpuritz
closed
8 years ago
0
Update ReferenceOpt.sh
#17
jpuritz
closed
8 years ago
0
Tutorial
#16
outpaddling
closed
8 years ago
4
bedtools version
#15
outpaddling
closed
8 years ago
2
Error in install_dDocent_requirements
#14
jerowe
closed
8 years ago
1
Trimmatic jar and adapters are correctly found
#13
biocoder
closed
8 years ago
2
Typos
#12
chollenbeck
closed
8 years ago
0
Stirplate
#11
jsage8
closed
8 years ago
0
Version 2.1
#10
jpuritz
closed
9 years ago
0
Jpuritz ddocent 2.0
#9
jpuritz
closed
9 years ago
0
Jpuritz d docent 2.0
#8
jpuritz
closed
9 years ago
0
Jpuritz d docent 2.0
#7
jpuritz
closed
9 years ago
0
Missing close quote
#6
rwtaylor
closed
9 years ago
0
install_dDocent.FB_requirements
#5
rwtaylor
closed
9 years ago
1
Fix minor issues in in install script
#4
ninsbl
closed
9 years ago
1
"rename.for.dDocent" not working
#3
ghost
closed
9 years ago
1
How to give population FILE to dDocent.FB ?
#2
gouthamatla
closed
9 years ago
2
Incorrect path searching for dependent software
#1
andrewjrobinson
closed
9 years ago
1
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