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spinal-cord-7t
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coil-qc-code
7T Spinal Cord Coil QC Analysis Code
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Unified labels to only use that on TFLTB1 image
#90
jcohenadad
closed
1 week ago
7
Normalize snr plots
#89
evaalonsoortiz
closed
3 weeks ago
1
Normalize SNR plots with average B1+ along the cord
#88
evaalonsoortiz
closed
3 weeks ago
1
Why redefining the labels for DREAM and SNR is they already exist for TFL?
#87
jcohenadad
closed
1 week ago
2
Simplify code and use variables
#86
jcohenadad
opened
3 weeks ago
0
Linear interpolation might not be appropriate for the mask
#85
jcohenadad
opened
3 weeks ago
0
Confusing code for labeling, mask creation and registration
#84
jcohenadad
closed
3 weeks ago
1
sct_flatten_sagittal changes the dynamic range of the image
#83
evaalonsoortiz
opened
3 weeks ago
1
Registration issues: `acq-coilQaSagLarge_SNR_T0000`
#82
jcohenadad
opened
3 weeks ago
0
Registration issues: `DREAMTB1avgB1map`
#81
jcohenadad
opened
3 weeks ago
0
Add section that generate a GIF animation to assess the quality of co-registration
#80
jcohenadad
opened
3 weeks ago
1
RuntimeError: ../../sub-CRMBM/fmap/mask_spinalcord_DREAM.nii.gz does not exist
#79
jcohenadad
closed
3 weeks ago
3
Make sure extraction does include values interpolated close to zero values
#78
jcohenadad
opened
3 weeks ago
1
Add coil element layout across coils
#77
jcohenadad
opened
1 month ago
3
Generate approximate mask of spinal cord
#76
jcohenadad
closed
1 month ago
5
Co-register phantom fmap across sites
#75
jcohenadad
closed
1 month ago
1
Error: SCT's Matplotlib interaction when used in interactive mode
#74
jcohenadad
opened
1 month ago
0
Co-register phantom fmap across sites
#73
jcohenadad
closed
1 month ago
1
Co-register phantom fmap across sites
#72
jcohenadad
closed
1 month ago
1
Generate an approximate spinal cord mask for the phantom data
#71
jcohenadad
closed
1 month ago
4
Special if case for `acq-coilQaSagLarge_SNR_T0000` is overwritten
#70
jcohenadad
closed
3 weeks ago
5
Converted notebook to script for processing phantom data
#69
jcohenadad
closed
1 month ago
1
Consider moving notebook to python script
#68
jcohenadad
opened
1 month ago
0
FileNotFoundError: [Errno 2] No such file or directory: '/Users/julien/code/coil-qc-code/data-phantom/derivatives/labels/sub-UCL/fmap/sub-UCL_acq-coilQaSagSmall_GFactor_mask.nii.gz'
#67
jcohenadad
closed
4 weeks ago
1
openneuro-py download error: No such option: --target_dir
#66
jcohenadad
closed
1 month ago
2
Flatten the spinal cord in SNR and B1+ maps to better visualization
#65
evaalonsoortiz
opened
1 month ago
0
Co-register in-vivo and phantom B1+ and SNR maps for visualisation purposes
#64
evaalonsoortiz
opened
1 month ago
7
Consider quantifying g-factor within a mask, or overlaying an anatomical image
#63
dpapp86
closed
4 weeks ago
4
Consider cropping the g-factor map
#62
jcohenadad
closed
1 month ago
3
Phantom sub-MSSM_acq-coilQaTra_GFactor file appears to be corrupt
#61
evaalonsoortiz
opened
2 months ago
1
Phantom dataset json files have incorrect format/information
#60
evaalonsoortiz
closed
2 months ago
2
Key to link sub1/2/3 to D/L/R needed
#59
evaalonsoortiz
opened
2 months ago
1
Dynamic range of coilQA 1/g factor map
#58
evaalonsoortiz
closed
2 months ago
2
lack of documentation on the coilQA sequence
#57
evaalonsoortiz
opened
2 months ago
4
Consider cropping the SNR maps
#56
jcohenadad
opened
2 months ago
1
Review of SNR registration to MP2RAGE scan
#55
jcohenadad
closed
2 months ago
0
Review of DREAM registration to MP2RAGE scan
#54
jcohenadad
opened
2 months ago
0
Add QC report for `sct_deepseg` command
#53
jcohenadad
closed
2 months ago
0
Review of TB1TFL segmentations
#52
jcohenadad
closed
2 months ago
0
Projection of vertebral levels should be done orthogonally to the cord centerline
#51
jcohenadad
opened
2 months ago
0
QC for vertebral labeling is showing the segmentation instead of the image
#50
jcohenadad
closed
2 months ago
0
`sub-MPI1: Manual segmentation not found`
#49
jcohenadad
closed
2 months ago
0
`sub-MPI2_inv-1_part-mag_MP2RAGE.nii.gz` is missing
#48
jcohenadad
closed
2 months ago
11
Review of automatic MP2RAGE segmentation
#47
jcohenadad
closed
2 months ago
2
Issue downloading with openneuro-py
#46
jcohenadad
closed
2 months ago
3
`openneuro-py` CLI to add in requirements
#45
jcohenadad
opened
2 months ago
0
Remove `dataset_description.json`
#44
jcohenadad
closed
2 months ago
2
TB1TFL anat scans for site MSSM do not exist
#43
evaalonsoortiz
closed
2 months ago
4
Make data public?
#42
jcohenadad
opened
3 months ago
1
Change homo sapiens for something more relevant for the phantom data
#41
jcohenadad
opened
3 months ago
7
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