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timbitz
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Whippet.jl
Lightweight and Fast; RNA-seq quantification at the event-level
MIT License
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Error while including unannotated splice-sites
#151
ldenti
opened
1 month ago
0
How do I know if an event in the .diff.gz output was calculated involving unannotated alternative junctions
#150
santataRU
opened
1 month ago
0
whippet index failed, link to download the hg38 GTF2.2 on this website does not work
#149
santataRU
opened
1 month ago
1
DNAmer not defined
#148
Matthew47work
opened
5 months ago
2
Is Whippet adapted for long reads?
#147
Oliverfeudj
opened
5 months ago
1
how to quantify pair-end data
#146
ELMMA-FUNNY
closed
5 months ago
0
Update README.md
#145
timbitz
closed
8 months ago
0
Regarding ArgumentError: cannot create a mer with ambiguous nucleotides
#144
PRIYANKA-22091995
opened
9 months ago
1
Update README.md
#143
timbitz
closed
10 months ago
0
ERROR: expected package `WaveletMatrices [c0580c95]` to be registered when compiling
#142
noahpieta
opened
10 months ago
2
ERROR: LoadError: BoundsError: attempt to access BioSequences.LongDNASeq at index [65269405:65269446]
#141
dschwoerer
opened
1 year ago
1
Merge
#140
timbitz
closed
1 year ago
0
ERROR: LoadError: Cannot encode 78 to BioSequences.DNAAlphabet{2}()
#139
mrb20045
closed
1 year ago
3
Missing dependencies for Julia
#138
astrophys
opened
1 year ago
5
How whippet is listing alternative events?
#137
pierreg2
opened
1 year ago
2
psi
#136
shregeno8
closed
1 year ago
0
Issue with BioSequences
#135
zoescherzer0318
closed
1 year ago
3
ERROR: LoadError: SystemError: opening file "/home/emanuele/Whippet.jl/bin/../index/graph.jls": No such file or directory
#134
emanueleraggi
closed
2 years ago
4
Issue with ArgParse
#133
zoescherzer0318
closed
2 years ago
3
Fastq.gz files from different lanes
#132
shregeno8
closed
2 years ago
1
Any idea to generate VCF/VEP files from Whippet output files?
#131
ptnaimelmm
opened
2 years ago
1
How to interpret complexity column in the .psi.gz output files?
#130
MorticiaGiulia
opened
2 years ago
1
jnc read count
#129
BeatrizdeToledo
closed
2 years ago
2
whippet-quant.jl does not output integer gene level read counts
#128
MiqG
closed
2 years ago
2
Where is "graph.jls"?
#127
justinjisu
closed
2 years ago
2
Optimal value for --bam-min-reads parameter
#126
narges-s
opened
2 years ago
1
segfault using whippet-quant.jl
#125
tsgouros
closed
2 years ago
4
ERROR: LoadError: BoundsError: attempt to access 2-element Array{Whippet.SGAlignNode,1} at index
#124
amitfenn
closed
2 years ago
2
error index in Serializing splice graph index...
#123
BeatrizdeToledo
closed
3 years ago
0
Probability for deltaPsi
#122
OlgaVT
opened
3 years ago
2
what is forum for code questions?
#121
tsgouros
closed
2 years ago
4
bam index file in .csi format
#120
akshaya-v
opened
3 years ago
2
LICENSE to LGPL2.1
#119
timbitz
opened
3 years ago
1
Error during quantification of FASTQ files
#118
dBenedek
opened
3 years ago
12
1.6 Bugfix for BAM supplemented indexing
#117
timbitz
closed
3 years ago
1
ERROR: LoadError: UndefVarError: BAM not defined
#116
Alex-Nesta
closed
3 years ago
1
Updates for julia 1.6
#115
timbitz
closed
3 years ago
1
--biascorrect specific error: LoadError: BoundsError: attempt to access 32nt DNA Sequence:
#114
rfara
opened
3 years ago
4
Bugfixes for v1.5
#113
timbitz
closed
3 years ago
1
regex ismatch deprecated for occursin
#112
timbitz
closed
3 years ago
0
whippet-quant ERROR: LoadError: UndefVarError: shuffle not defined
#111
rfara
closed
3 years ago
1
curseq is GTCTTGTTGTTGGGCTTG of type BioSequences.BioSequence{BioSequences.DNAAlphabet{2}}
#110
rfara
closed
3 years ago
2
Update Whippet to current julia version v1.5.3
#109
timbitz
closed
3 years ago
1
Option for reverse strand-specific data in bin/whippet-index.jl
#108
areyesq89
opened
3 years ago
0
how does whippet define exon skip events?
#107
mhjiang97
opened
3 years ago
5
Generate "sam | bam" files from the quantification step
#106
JamalEH
opened
3 years ago
0
support for fasta files or bam files as input in whippet-quant?
#105
wbvguo
opened
3 years ago
0
whippet-quant.jl error
#104
JamalEH
closed
2 years ago
2
Splice junctions strandedness
#103
PeterVenhuizen
opened
4 years ago
1
Is it normal to have different number of events for different samples with same index.jls?
#102
josegarciamanteiga
opened
4 years ago
2
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