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clairelbromley
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ZebrafishKymographing
Various software tools written for analysis of lumen opening and membrane retraction in zebrafish.
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Geometric midline analysis: label cells as up or down
#73
clairelbromley
closed
7 years ago
0
Export jpeg/tiff of the geometric midline overlaid on the original tif image
#72
clairelbromley
closed
7 years ago
0
movie maker doesn't appear to be working for multichannel z stack data
#71
clairelbromley
closed
7 years ago
0
Rhombomere addition: mismatch between rhombomeres in metadata
#70
clairelbromley
closed
7 years ago
0
medFiltThesisFig: add scale bar?
#69
clairelbromley
closed
7 years ago
2
Some of the raw data has not been processed
#68
clairelbromley
closed
7 years ago
0
Inclusion data import prevents data that has not been QC'd previously from being opened
#67
clairelbromley
closed
7 years ago
6
Error running kymbase
#66
clairelbromley
closed
7 years ago
0
Bug when trying to open embryo in viewer
#65
clairelbromley
closed
7 years ago
4
Green line no longer displayed in movie
#64
clairelbromley
closed
7 years ago
1
Q: extracting cut time information
#63
clairelbromley
closed
7 years ago
2
Crash due to insufficient java memory
#62
clairelbromley
closed
7 years ago
10
Error in viewer trying to import inclusion data
#61
clairelbromley
closed
7 years ago
2
duplicates of some embryos being exported into xls file - one set with QC and one set without
#60
clairelbromley
closed
7 years ago
10
csv files are not being saved in correct columns
#59
clairelbromley
closed
7 years ago
2
URGENT temp files not being saved
#58
clairelbromley
closed
7 years ago
10
Problem with short 90' cuts
#57
clairelbromley
closed
7 years ago
2
Problems with multipage fast tif exports
#56
clairelbromley
closed
7 years ago
7
Check green highlighted lines definitely correspond to the kymographs
#55
clairelbromley
closed
7 years ago
1
Toggle edge on and off in viewer
#54
clairelbromley
closed
7 years ago
4
*URGENT changes to max etc speed calculations in export
#53
clairelbromley
closed
7 years ago
1
Hot key for 'overlay fitted line and speed'
#52
clairelbromley
closed
7 years ago
1
JUST FYI: can't have case in viewer of two different kymo lengths used
#51
clairelbromley
closed
7 years ago
1
Duplicate data export
#50
clairelbromley
closed
7 years ago
1
Another memory based crash
#49
clairelbromley
closed
7 years ago
1
Problems importing data saved during crash highlighted in issue 46
#48
clairelbromley
closed
7 years ago
3
Autosave function
#47
clairelbromley
closed
7 years ago
1
ARGH! Crash!
#46
clairelbromley
closed
7 years ago
10
The 'save' movie button on the viewer crashes the software
#45
clairelbromley
opened
7 years ago
3
Change viewer movie display
#44
clairelbromley
closed
7 years ago
1
Problem importing inclusion data
#43
clairelbromley
closed
7 years ago
2
Viewer display errors
#42
clairelbromley
closed
7 years ago
0
Viewer crashing - below error message was in command window
#41
clairelbromley
closed
7 years ago
3
*IMPORTANT* Strange speeds displayed on viewer
#40
clairelbromley
closed
7 years ago
3
Problems with memory using manual edge finding
#39
clairelbromley
closed
7 years ago
4
Problems using cziFig for midline dynamics analysis
#38
clairelbromley
closed
7 years ago
16
Problems using latest code to run 'kymographBase.m'
#37
clairelbromley
closed
7 years ago
0
Missing data in one embryo
#36
clairelbromley
closed
7 years ago
4
Problems with selecting the damaged side
#35
clairelbromley
closed
7 years ago
1
Problems with new export
#34
clairelbromley
closed
7 years ago
2
Problems with export
#33
clairelbromley
opened
7 years ago
8
URGENT: ERROR IN SPEED EXPORTS
#32
dougkelly88
closed
7 years ago
1
Extra sheet on export spreadsheet that summarises the number of 'no edge' , 'misassigned' etc kymographs per embryo
#31
clairelbromley
closed
7 years ago
3
Labelling 'damaged' and 'undamaged' side for behind apical cuts
#30
clairelbromley
closed
7 years ago
2
Viewer error for 'no processing' data
#29
clairelbromley
closed
7 years ago
5
Problems with Viewer
#28
clairelbromley
closed
7 years ago
1
'upper' or 'lower' label on detected edge sometimes appears over the edge itself
#27
clairelbromley
closed
7 years ago
0
czi processing
#26
clairelbromley
closed
7 years ago
0
Can't seem to load latest metadata
#25
clairelbromley
closed
7 years ago
3
Mismatch of manual scattered frames numbering in excel export
#24
clairelbromley
closed
7 years ago
0
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