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clairelbromley
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ZebrafishKymographing
Various software tools written for analysis of lumen opening and membrane retraction in zebrafish.
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Error: Exp86E2 T1
#123
dougkelly88
opened
6 years ago
12
Error when trying to upload Exp83 E1 data
#122
dougkelly88
opened
6 years ago
3
Questions about the NcadKrox manual tool
#121
clairelbromley
opened
6 years ago
1
If tissue aligned to vertical axis, use alternative methods for AP lengths
#120
dougkelly88
opened
6 years ago
0
Generate early/late grouped stats automatically
#119
dougkelly88
opened
6 years ago
2
Ensure that stats output by default match those generated by various scripts for the thesis
#118
dougkelly88
opened
6 years ago
0
Problem using viewer- up side of kymographs wont load and get following error message
#117
clairelbromley
opened
6 years ago
6
Problems trying to generate kymographs for lumen opening data
#116
clairelbromley
opened
7 years ago
2
Allow skipping to next timepoint without saving results or images
#115
dougkelly88
closed
6 years ago
1
Error when trying to generate kymo for single channel
#114
clairelbromley
closed
7 years ago
1
Error when trying to generate kymographs
#113
clairelbromley
opened
7 years ago
5
Bleach ROI changes to cyan at wrong time in Viewer
#112
clairelbromley
closed
6 years ago
1
CziFig: different number of pixels in display of separate axes and normal (may be related to latest commit)
#111
clairelbromley
closed
7 years ago
0
Problems with cziFig: unable to use "both" to do both upwards and downwards kymographs
#110
clairelbromley
opened
7 years ago
0
Can you double check the time placement of the bleach axis?
#109
clairelbromley
closed
7 years ago
2
Error when trying to use Viewer, this appears after metadata has been selected
#108
clairelbromley
closed
7 years ago
4
Striping in CZI-generated kymographs
#107
clairelbromley
closed
7 years ago
3
Problems using viewer
#106
clairelbromley
opened
7 years ago
0
Error in cziFig when trying to generate a tif from the two channel block experiments
#105
clairelbromley
opened
7 years ago
0
Error with cziFig
#104
clairelbromley
opened
7 years ago
1
Unknown edits
#103
clairelbromley
opened
7 years ago
0
Error for embryo data exp1 13:16
#102
dougkelly88
opened
7 years ago
0
Error when tries to generate second set of basal kymographs
#101
clairelbromley
opened
7 years ago
0
Error when trying to open lumen opening data in czifig on windows machine
#100
clairelbromley
opened
7 years ago
0
TODO: add scrollbar for channel control
#99
dougkelly88
opened
7 years ago
7
Problems generating kymographs for tif files: following error appears once try to run code
#98
clairelbromley
closed
7 years ago
1
Manual addition of metadata into cziFig for tif files
#97
clairelbromley
closed
7 years ago
2
Unknown warning trying to do long kymo axis length to look at basal
#96
clairelbromley
closed
7 years ago
1
cziFig: z stack error
#95
clairelbromley
opened
7 years ago
4
Error message with cziFig for playing music
#94
clairelbromley
opened
7 years ago
0
Change keyboard shortcut for viewing metadata from M
#93
clairelbromley
closed
7 years ago
0
Adding something to show bleach frame
#92
clairelbromley
closed
7 years ago
0
Please could you add the ability to look at these parameters
#91
clairelbromley
opened
7 years ago
1
Ability to change before and after time for tifs in cziFig
#90
clairelbromley
closed
7 years ago
2
Error message when generating tiffs
#89
clairelbromley
opened
7 years ago
1
Bring out laser power used for bleaching in user interface for czi?
#88
clairelbromley
closed
7 years ago
0
Czifig: current "save tiff" option currently only saves one frame
#87
clairelbromley
closed
7 years ago
4
To discuss: manually drawing lines on czifig data
#86
clairelbromley
opened
7 years ago
0
TO DISCUSS: change to bleach data processing
#85
clairelbromley
opened
7 years ago
0
Czi fig: prevent files popping up during analysis
#84
clairelbromley
opened
7 years ago
0
czifig: add in noise when finishes processing
#83
clairelbromley
closed
7 years ago
1
czi fig: possible to change slider reset?
#82
clairelbromley
opened
7 years ago
0
czi fig: Quick check of axes output on kymographs created
#81
clairelbromley
opened
7 years ago
0
Czi fig: turn off exponential fit
#80
clairelbromley
closed
7 years ago
0
Czi fig: bleach data: ability to change kymograph parameters
#79
clairelbromley
closed
7 years ago
0
Czi fig: bleach data. Change default median filter size
#78
clairelbromley
closed
7 years ago
0
Czi fig: Bleached data. Way to tell when bleaching occurred?
#77
clairelbromley
opened
7 years ago
0
Enhancements to geometric midline analysis
#76
clairelbromley
opened
7 years ago
0
Enhancements to cziFig: bleach data
#75
clairelbromley
closed
7 years ago
8
* Need to finish looking at the two different methods for extrapolation...
#74
clairelbromley
closed
7 years ago
0
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