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umccr
/
RNAsum
Pipeline for generating RNAseq-based cancer patient reports
https://umccr.github.io/RNAsum/
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manhattanly::manhattanr gene argument specified as Diff_Z_score but this column not found in 'x' data.frame
#129
pdiakumis
closed
8 months ago
0
Update link to PURPLE
#128
JMarzec
closed
9 months ago
0
Update link to PCGR tier documentation
#127
JMarzec
closed
9 months ago
0
Handle sash SV file
#126
pdiakumis
closed
1 month ago
2
Deploy conda pkg and Docker image
#125
pdiakumis
closed
11 months ago
0
Rmd refactor (part 10)
#124
pdiakumis
closed
11 months ago
0
Consider rounding expression values
#123
pdiakumis
opened
11 months ago
0
exprGroupsStats_geneWise.R: Subscript out of bounds
#122
pdiakumis
closed
11 months ago
1
Rmd refactor (part 9)
#121
pdiakumis
closed
1 year ago
3
Add local download/runner script
#120
pdiakumis
closed
1 year ago
0
Add DOI
#119
skanwal
closed
1 year ago
0
Update run chunk condition
#118
skanwal
closed
1 year ago
2
Use micromamba in GitHub Actions
#117
pdiakumis
closed
1 year ago
0
Remove versions from gene names and PAR-Y contigs
#116
skanwal
closed
1 year ago
0
Handle empty Arriba but non-empty Dragen fusions
#115
pdiakumis
closed
1 year ago
0
filter gene names with "PAR_Y"
#114
skanwal
closed
1 year ago
0
Handle empty fusion table
#113
pdiakumis
closed
1 year ago
0
Empty fusion outputs not handled
#112
skanwal
closed
8 months ago
3
Remove version from ensembl gene names
#111
skanwal
closed
1 year ago
0
Handle new ensembl gene annotations
#110
skanwal
closed
1 year ago
3
Failed clinical sample
#109
skanwal
closed
1 year ago
6
Keep reference data in separate R data package
#108
pdiakumis
closed
1 year ago
0
Conda + Docker support
#107
pdiakumis
closed
1 year ago
1
Build manhattanly conda dependency
#106
pdiakumis
closed
1 year ago
1
Update pkgdown website
#105
pdiakumis
closed
1 year ago
1
Set up conda package
#104
pdiakumis
closed
1 year ago
1
Rmd refactor (part 8)
#103
pdiakumis
closed
1 year ago
0
Use AnnotationHub to access ensembldb
#102
skanwal
closed
8 months ago
2
Rmd refactor (part 7)
#101
pdiakumis
closed
1 year ago
1
Upgrade bioconductor version
#100
alexiswl
closed
1 year ago
1
Docker Buildx GH Actions update
#99
alexiswl
closed
1 year ago
4
Github Actions fails at Create and Push Manifest File step of tag_manifest job
#98
alexiswl
closed
1 year ago
0
Fix cell colouring for data other than CN
#97
skanwal
closed
1 year ago
1
exprTable: dedup breaks for DT
#96
pdiakumis
closed
1 year ago
3
Rmd refactor (part 6)
#95
pdiakumis
closed
1 year ago
0
Fix fusion prep from Dragen and Arriba inputs
#94
skanwal
closed
1 year ago
1
exprTable: use unique cuts/values for DT styleInterval
#93
pdiakumis
closed
1 year ago
1
Refactor and fixes
#92
skanwal
closed
1 year ago
0
Update Fusion Filtration
#91
pdiakumis
closed
8 months ago
1
Missing Fusion Handling
#90
pdiakumis
closed
1 year ago
1
Merge duplicated CGI known translocations
#89
pdiakumis
closed
1 year ago
2
Rmd refactor (part 5)
#88
pdiakumis
closed
1 year ago
2
Use {conflicted} for R pkg conflict resolution
#87
pdiakumis
closed
1 year ago
1
Update Ensembl
#86
pdiakumis
closed
8 months ago
2
Rmd refactor4
#85
skanwal
closed
1 year ago
0
Rmd refactor4 pd
#84
pdiakumis
closed
1 year ago
3
Rmd refactor (part 3)
#83
pdiakumis
closed
1 year ago
3
Update test data-2
#82
skanwal
closed
1 year ago
0
Update test data
#81
skanwal
closed
1 year ago
1
Update params
#80
skanwal
closed
1 year ago
0
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