issues
search
cancerDHC
/
example-data
This repository is intended to act as a store of example data files from across the NCI Cancer Research Data Commons (CRDC) nodes in a number of formats.
MIT License
0
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Delete CRDC-H model
#48
gaurav
closed
2 years ago
0
Document that the Jupyter Notebooks can be started with `poetry run jupyter notebook`
#47
gaurav
closed
2 years ago
0
Add pytest-cov to test coverage of the generated Python classes
#46
gaurav
opened
2 years ago
0
Remove direct link to CRDCH schema
#45
gaurav
opened
2 years ago
0
CRDC-H Decimals vs YAML from https://github.com/cancerDHC/ccdhmodel/issues/131
#44
turbomam
opened
2 years ago
1
Add demographic fields to gdc-head-and-mouth data
#43
jooho-lee-kim
closed
2 years ago
3
Discussion notebook
#42
turbomam
opened
2 years ago
4
Replace pipenv with poetry
#41
gaurav
closed
2 years ago
1
Fix bugs in automated GDC to CRDCH transformation script
#40
gaurav
opened
2 years ago
0
Uncomment non-validating data from the CCDH Pilot examples and fix CRDCH model so that they work correctly
#39
gaurav
opened
2 years ago
1
Rename `example-data` repo to something more self explanatory?
#38
sujaypatil96
opened
2 years ago
5
Notebook for PDC to CRDCH transformation workflow
#37
sujaypatil96
closed
2 years ago
3
Conversion examples for Clinical Trials Data Commons?
#36
turbomam
opened
2 years ago
2
Tools team's responsibility for secure computing and Authority to Operate?
#35
turbomam
opened
2 years ago
1
Implement example mapping activities as APIs
#34
turbomam
opened
2 years ago
1
Ongoing discussion about where to find mappings for terms as well as values
#31
turbomam
opened
2 years ago
4
Try out JSON-based methods for recording provenance
#30
gaurav
opened
2 years ago
1
Think about removing spaces from filenames in this repo
#29
gaurav
opened
2 years ago
0
started terminology service lookups #27
#28
turbomam
opened
2 years ago
2
update notebooks: switch from enums to codable concepts
#27
turbomam
opened
2 years ago
5
Started updating GDC to CCDH conversion to use crdch_model
#26
gaurav
closed
2 years ago
2
Update Jupyter Notebooks to use crdch_model from Pipfile
#25
gaurav
opened
2 years ago
0
Figure out how to add demographic information to GDC head-and-mouth data
#24
gaurav
closed
2 years ago
3
Cannot install `pandas` on my computer: odd `numpy` error
#23
gaurav
opened
2 years ago
1
Add CCDH Pilot examples
#22
gaurav
closed
2 years ago
4
Updated Pipfile to include `crdch-model` from PyPI
#21
gaurav
closed
2 years ago
6
import ccdhmodel from PyPI, not from filesystem
#20
turbomam
closed
2 years ago
6
Document a flow for new use cases to be proposed and developed
#19
gaurav
opened
2 years ago
0
Integrate Jupyter Notebooks into automated testing
#18
gaurav
opened
2 years ago
0
`importlib-metadata` dependency required
#17
sujaypatil96
closed
2 years ago
1
Add code and data to query multiple nodes and convert the resulting data into the CRDCH model
#16
gaurav
opened
2 years ago
0
Add `@type` to the JSON-LD output
#15
gaurav
opened
2 years ago
1
Fix Jupyter Notebook
#14
gaurav
closed
2 years ago
0
update GDC to CCDH conversion.ipynb
#13
turbomam
closed
2 years ago
2
Add a LICENSE file to this repository
#12
gaurav
opened
3 years ago
1
Automated test suite
#11
gaurav
closed
2 years ago
0
Create example CRDC-H files in several formats and ensure that they can be validated
#10
gaurav
opened
3 years ago
0
Add PDC import and show how the CCDH model can be used to synthesize data between GDC and PDC
#9
gaurav
opened
3 years ago
0
Convert "head and neck" Juypter Notebooks into an automated Python test suite
#8
gaurav
closed
2 years ago
6
Add Markdown version of the GDC to CCDH transform Jupyter Notebook
#7
gaurav
closed
3 years ago
0
Add support for extracting the full sample/portion/analyte hierarchy from GDC
#6
gaurav
opened
3 years ago
0
Add support for additional Jupyter Notebook tools
#5
gaurav
opened
3 years ago
1
Add GDC and PDC "Head and Mouth" datasets
#4
gaurav
closed
3 years ago
0
Jupyter Notebook for converting GDC data to LinkML via Python classes
#3
gaurav
closed
3 years ago
0
Add LinkML data validation
#2
gaurav
closed
3 years ago
0
Extract data for subject 09CO022 from GDC, PDC and CDA APIs
#1
gaurav
closed
3 years ago
1