clairelbromley ZebrafishKymographing issues

clairelbromley / ZebrafishKymographing

Various software tools written for analysis of lumen opening and membrane retraction in zebrafish.

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issues

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Error: Exp86E2 T1

#123 dougkelly88 opened 6 years ago
12
Error when trying to upload Exp83 E1 data

#122 dougkelly88 opened 6 years ago
3
Questions about the NcadKrox manual tool

#121 clairelbromley opened 6 years ago
1
If tissue aligned to vertical axis, use alternative methods for AP lengths

#120 dougkelly88 opened 6 years ago
0
Generate early/late grouped stats automatically

#119 dougkelly88 opened 6 years ago
2
Ensure that stats output by default match those generated by various scripts for the thesis

#118 dougkelly88 opened 6 years ago
0
Problem using viewer- up side of kymographs wont load and get following error message

#117 clairelbromley opened 6 years ago
6
Problems trying to generate kymographs for lumen opening data

#116 clairelbromley opened 6 years ago
2
Allow skipping to next timepoint without saving results or images

#115 dougkelly88 closed 6 years ago
1
Error when trying to generate kymo for single channel

#114 clairelbromley closed 6 years ago
1
Error when trying to generate kymographs

#113 clairelbromley opened 6 years ago
5
Bleach ROI changes to cyan at wrong time in Viewer

#112 clairelbromley closed 6 years ago
1
CziFig: different number of pixels in display of separate axes and normal (may be related to latest commit)

#111 clairelbromley closed 6 years ago
0
Problems with cziFig: unable to use "both" to do both upwards and downwards kymographs

#110 clairelbromley opened 6 years ago
0
Can you double check the time placement of the bleach axis?

#109 clairelbromley closed 7 years ago
2
Error when trying to use Viewer, this appears after metadata has been selected

#108 clairelbromley closed 6 years ago
4
Striping in CZI-generated kymographs

#107 clairelbromley closed 7 years ago
3
Problems using viewer

#106 clairelbromley opened 7 years ago
0
Error in cziFig when trying to generate a tif from the two channel block experiments

#105 clairelbromley opened 7 years ago
0
Error with cziFig

#104 clairelbromley opened 7 years ago
1
Unknown edits

#103 clairelbromley opened 7 years ago
0
Error for embryo data exp1 13:16

#102 dougkelly88 opened 7 years ago
0
Error when tries to generate second set of basal kymographs

#101 clairelbromley opened 7 years ago
0
Error when trying to open lumen opening data in czifig on windows machine

#100 clairelbromley opened 7 years ago
0
TODO: add scrollbar for channel control

#99 dougkelly88 opened 7 years ago
7
Problems generating kymographs for tif files: following error appears once try to run code

#98 clairelbromley closed 7 years ago
1
Manual addition of metadata into cziFig for tif files

#97 clairelbromley closed 7 years ago
2
Unknown warning trying to do long kymo axis length to look at basal

#96 clairelbromley closed 7 years ago
1
cziFig: z stack error

#95 clairelbromley opened 7 years ago
4
Error message with cziFig for playing music

#94 clairelbromley opened 7 years ago
0
Change keyboard shortcut for viewing metadata from M

#93 clairelbromley closed 7 years ago
0
Adding something to show bleach frame

#92 clairelbromley closed 7 years ago
0
Please could you add the ability to look at these parameters

#91 clairelbromley opened 7 years ago
1
Ability to change before and after time for tifs in cziFig

#90 clairelbromley closed 7 years ago
2
Error message when generating tiffs

#89 clairelbromley opened 7 years ago
1
Bring out laser power used for bleaching in user interface for czi?

#88 clairelbromley closed 7 years ago
0
Czifig: current "save tiff" option currently only saves one frame

#87 clairelbromley closed 7 years ago
4
To discuss: manually drawing lines on czifig data

#86 clairelbromley opened 7 years ago
0
TO DISCUSS: change to bleach data processing

#85 clairelbromley opened 7 years ago
0
Czi fig: prevent files popping up during analysis

#84 clairelbromley opened 7 years ago
0
czifig: add in noise when finishes processing

#83 clairelbromley closed 7 years ago
1
czi fig: possible to change slider reset?

#82 clairelbromley opened 7 years ago
0
czi fig: Quick check of axes output on kymographs created

#81 clairelbromley opened 7 years ago
0
Czi fig: turn off exponential fit

#80 clairelbromley closed 7 years ago
0
Czi fig: bleach data: ability to change kymograph parameters

#79 clairelbromley closed 7 years ago
0
Czi fig: bleach data. Change default median filter size

#78 clairelbromley closed 7 years ago
0
Czi fig: Bleached data. Way to tell when bleaching occurred?

#77 clairelbromley opened 7 years ago
0
Enhancements to geometric midline analysis

#76 clairelbromley opened 7 years ago
0
Enhancements to cziFig: bleach data

#75 clairelbromley closed 7 years ago
8
* Need to finish looking at the two different methods for extrapolation...

#74 clairelbromley closed 7 years ago
0