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giremi
GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
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#57
JasminZarah
closed
1 year ago
1
[fai_fetch_seq] The sequence "10" not found
#56
JasminZarah
opened
1 year ago
0
error while loading shared libraries: libhts.so.1
#55
JiajunQiu
opened
3 years ago
1
demo for giremi
#54
huangl07
opened
4 years ago
1
there is no results and log after running
#53
Li-ZhiD
opened
4 years ago
0
SNV list in an analysis using an inbred mouse with/without drug treatment
#52
tyaoi
opened
5 years ago
0
Running problem
#51
JhinAir
opened
5 years ago
4
GIREMI executable depends on glibc 2.14
#50
alcharal
opened
5 years ago
0
GIREMI stopped working, Rout Error attached
#49
LastGenomeBender
closed
6 years ago
0
SNV list: How to get the Giremi input file from the vcf file
#48
mt831
closed
6 years ago
1
Segmentation fault (core dumped)
#47
Li-Michael
opened
6 years ago
3
convert the VCF_file into the input_fIle of GIREMI
#46
ajkshdkjahdka
opened
6 years ago
0
Error: Can't find snv in SNV list
#45
zambofd
opened
6 years ago
2
a problem about mark_snp.py
#44
ajkshdkjahdka
opened
6 years ago
1
why don't print SNV in intergenic region
#43
zambofd
opened
6 years ago
0
error in R out files
#42
mj163163
opened
6 years ago
1
major_base all N and pvalue_MI all -1
#41
duanyuange
opened
6 years ago
0
double free or corruption (!prev): 0x000000000dd4aaa0 ***
#40
yang91
opened
6 years ago
0
Can GIREMI be used in non-mammalian species?
#39
XMaBio
opened
7 years ago
2
stack smashing detected
#38
DDoddamani
opened
7 years ago
0
Low quantity of RNA editings found
#37
s-a-nersisyan
opened
7 years ago
2
Homozygous SNV's
#36
steveners
closed
7 years ago
2
Is it possible not to input SNV list?
#35
XMaBio
opened
7 years ago
2
Mouse public SNP data
#34
felipeadgr
opened
7 years ago
1
Prepare SNV list
#33
dfv
closed
7 years ago
0
SNV list strategy for normal and tumor samples
#32
u9090
opened
7 years ago
0
can't find ifRNAE
#31
sunlei0227
opened
7 years ago
0
Publish the sourch code
#30
lipan6461188
opened
7 years ago
0
SNV File Format
#29
carlshotwell
opened
7 years ago
2
Interpretation of GIREMI results
#28
ma-diroma
opened
7 years ago
4
Allelic depth calculated, but glm & ifRNAE not calculated, MI statistics are off
#27
JohnMCMa
closed
7 years ago
10
Segmentation fault (core dumped)
#26
fzhang005
opened
7 years ago
16
STAR mapping + GATK
#25
Angelven
opened
7 years ago
5
Error in data.frame
#24
Lsteenhuis
closed
7 years ago
4
Question about SNV list
#23
rz2333
opened
7 years ago
4
Not strictly about the code: the LLR test
#22
JohnMCMa
opened
8 years ago
0
Mapping
#21
jingyayeah
opened
8 years ago
2
repeat snv and cannot find the ifRNAE
#20
hemingwang
opened
8 years ago
20
error:Can't find snv in ss!i
#19
jingyayeah
opened
8 years ago
3
GIREMI troubleshooting
#18
ghost
opened
8 years ago
2
Problems in running a long time
#17
HungerNature
opened
8 years ago
1
Segmentation fault
#16
purplerainf
closed
8 years ago
8
Problem in file.res.out : dat.pos empty
#15
stoumoi
opened
8 years ago
5
Segmentation fault
#14
IraShch
opened
8 years ago
8
Segmentation fault (core dumped)
#13
chengeng
opened
8 years ago
4
-bash: giremi: cannot execute binary file
#12
HungerNature
opened
8 years ago
4
strand in SNV file
#11
msahraeian
opened
8 years ago
1
issues with the error while loading shared libraries: libhts.so.1(already set the LD_LIBRARY_PATH)
#10
mengysun
opened
8 years ago
10
error:Can't find snv in ss!i
#9
Angelven
opened
8 years ago
3
Error while running giremi.r
#8
narangsign
closed
8 years ago
4
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